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There is a knowledge gap surrounding how drought and wildfire, two increasingly frequent disturbances, will alter soil fungal communities. Moreover, studies that directly compare ambient and drought-treated soil fungal communities in the context of wildfire are exceptionally scarce. We assessed the response and recovery of soil fungal communities and functional guilds in two sites – a grassland and a coastal sage shrubland – after a severe wildfire burned a long-term drought experiment. We collected soil samples at four collection dates over an eight-month period after wildfire and amplified fungal DNA. We predicted that fungal communities within the drought and ambient treatments would differ significantly across collection dates owing to differing responses to post-wildfire conditions. Richness was stable across collection dates, regardless of precipitation treatment, in both sites. Differences between treatments were significant at every collection date with respect to taxonomical community composition. Differences in community composition between collection dates within each treatment were also significant. Additionally, the monotonic trends of drought and ambient communities over time differed in strength and direction. Differences in shrubland functional guild composition across collection dates and contrasting trends suggest a drought-dependent shift after the fire. Overall, we conclude that drought mediates how soil fungal communities respond after a wildfire in the long term, however drought effects may differ across ecosystems.